Details for model: "APOA4 -> high & DEFB104A -> high" vs. Other

  • GEO dataset ID: METABRIC
  • Cancer Type: Breast cancer
  • Clinical Variable: triple = "negative"
  • Number of samples:
  • Gene 1: APOA4 (probe = "ILMN_1675706")
  • Gene 2: DEFB104A (probe = "ILMN_1725401")

Statistical details:

  • Model: "APOA4-> high & DEFB104A -> high" vs. Other (p-value: 2.72e-05, positive effect: Other; )
  • Gene 1: APOA4 (p-value:0.204, positive effect: APOA4__low;)
  • Gene 2: DEFB104A (p-value:0.0154, positive effect: DEFB104A__low;)

Model: "APOA4-> high & DEFB104A -> high" vs. Other

  • p-value: 2.72e-05
  • Positive effect: Other;
NObservedExpected(O-E)^2/E(O-E)^2/V
group=APOA4__high|DEFB104A__high;5527.914.512.3217.6
group=Other;26483.997.21.8417.6

Chisq= 17.6 on 1 degrees of freedom, p= 2.72e-05

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Gene 1: APOA4 (probe="ILMN_1675706")

  • p-value: 0.204
  • positve effect: APOA4__low;
NObservedExpected(O-E)^2/E(O-E)^2/V
group=APOA4__high;13348.642.80.7821.62
group=APOA4__low;18663.168.90.4861.62

Chisq= 1.6 on 1 degrees of freedom, p= 0.204

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Gene 2: DEFB104A (probe="ILMN_1725401")

  • p-value: 0.0154
  • positve effect: DEFB104A__low;
NObservedExpected(O-E)^2/E(O-E)^2/V
group=DEFB104A__high;14760.849.52.565.87
group=DEFB104A__low;17251.062.22.045.87

Chisq= 5.9 on 1 degrees of freedom, p= 0.0154

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